About CAGEd-oPOSSUM

Version

This is the version 1.0 release of CAGEd-oPOSSUM (Feb. 2016)


Genome assemblies

FANTOM5 CAGE peak coordinates and corresponding sequences scanned for TFBS are based on the following assemblies:

HumanGRCh37/hg19
MouseNCBI37/mm9


JASPAR TFBS profiles

The CAGEd-oPOSSUM pre-computed TFBS database is built with JASPAR 2016 CORE vetebrates profiles with information content >= 8 bits


Publication

Arenillas DJ, Forrest AR, Kawaji H, Lassmann T; FANTOM Consortium, Wasserman WW, Mathelier A. CAGEd-oPOSSUM: motif enrichment analysis from CAGE-derived TSSs. Bioinformatics. 2016 Jun 9. PMID: 27334471.

http://bioinformatics.oxfordjournals.org/content/early/2016/06/20/bioinformatics.btw337.long