Homer Known Motif Enrichment Results (/state/partition1/dave/CAGEd_oPOSSUM/analysis/human/results/FF_10174-103C3/homer_output)

Known Motif Enrichment Results (txt file)
Total Target Sequences = 1372, Total Background Sequences = 1377
RankMotifNameP-valuelog P-pvalueq-value (Benjamini)# Target Sequences with Motif% of Targets Sequences with Motif# Background Sequences with Motif% of Background Sequences with MotifMotif File PDF
1Rfx2(HTH)/LoVo-RFX2-ChIP-Seq(GSE49402)/Homer1e-52-1.207e+020.0000189.013.78%51.13.71%motif file (matrix) pdf
2RFX(HTH)/K562-RFX3-ChIP-Seq(SRA012198)/Homer1e-51-1.177e+020.0000183.013.34%49.03.56%motif file (matrix) pdf
3Rfx1(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer1e-33-7.655e+010.0000257.018.73%115.78.41%motif file (matrix) pdf
4X-box(HTH)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer1e-32-7.435e+010.0000143.010.42%45.73.32%motif file (matrix) pdf
5Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer1e-20-4.675e+010.0000286.020.85%164.911.98%motif file (matrix) pdf
6Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer1e-11-2.729e+010.00001108.080.76%999.072.58%motif file (matrix) pdf
7Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer1e-10-2.437e+010.0000665.048.47%546.439.70%motif file (matrix) pdf
8Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer1e-8-2.070e+010.00001109.080.83%1017.973.96%motif file (matrix) pdf
9JunD(bZIP)/K562-JunD-ChIP-Seq/Homer1e-8-2.032e+010.000069.05.03%31.82.31%motif file (matrix) pdf
10MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer1e-7-1.698e+010.0000578.042.13%483.935.16%motif file (matrix) pdf
11MYB(HTH)/ERMYB-Myb-ChIPSeq(GSE22095)/Homer1e-7-1.614e+010.0000832.060.64%739.053.69%motif file (matrix) pdf
12Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer1e-6-1.600e+010.0000393.028.64%311.122.60%motif file (matrix) pdf
13Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer1e-6-1.591e+010.0000701.051.09%607.644.15%motif file (matrix) pdf
14PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer1e-6-1.565e+010.0000302.022.01%229.316.66%motif file (matrix) pdf
15EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer1e-6-1.542e+010.0000800.058.31%708.851.50%motif file (matrix) pdf
16MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer1e-5-1.273e+010.0000658.047.96%576.841.91%motif file (matrix) pdf
17STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer1e-4-1.107e+010.0002460.033.53%390.928.40%motif file (matrix) pdf
18TATA-Box(TBP)/Promoter/Homer1e-4-1.077e+010.0003548.039.94%476.934.65%motif file (matrix) pdf
19CArG(MADS)/PUER-Srf-ChIP-Seq(Sullivan et al.)/Homer1e-4-1.048e+010.0004141.010.28%100.57.30%motif file (matrix) pdf
20Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer1e-4-1.027e+010.0005439.032.00%373.227.12%motif file (matrix) pdf
21AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer1e-4-1.027e+010.00051200.087.46%1150.383.58%motif file (matrix) pdf
22BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer1e-4-1.022e+010.0005693.050.51%621.945.18%motif file (matrix) pdf
23Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer1e-4-9.909e+000.0006625.045.55%555.740.37%motif file (matrix) pdf
24Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer1e-4-9.889e+000.0006389.028.35%327.323.78%motif file (matrix) pdf
25Egr1(Zf)/K562-Egr1-ChIP-Seq(GSE32465)/Homer1e-4-9.829e+000.0006778.056.71%708.351.46%motif file (matrix) pdf
26Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer1e-4-9.825e+000.0006657.047.89%587.442.68%motif file (matrix) pdf
27NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer1e-4-9.608e+000.0007888.064.72%821.659.69%motif file (matrix) pdf
28bZIP:IRF(bZIP,IRF)/Th17-BatF-ChIP-Seq(GSE39756)/Homer1e-3-8.770e+000.0015182.013.27%140.910.24%motif file (matrix) pdf
29Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer1e-3-8.700e+000.0015729.053.13%664.248.26%motif file (matrix) pdf
30RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer1e-3-8.509e+000.0018674.049.13%610.444.35%motif file (matrix) pdf
31Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer1e-3-8.500e+000.0018684.049.85%620.645.09%motif file (matrix) pdf
32HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer1e-3-8.389e+000.0019104.07.58%73.85.36%motif file (matrix) pdf
33Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer1e-3-8.004e+000.0027902.065.74%843.461.28%motif file (matrix) pdf
34SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer1e-3-7.825e+000.00311295.094.39%1266.392.01%motif file (matrix) pdf
35NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer1e-3-7.696e+000.0034434.031.63%380.027.61%motif file (matrix) pdf
36RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer1e-3-7.241e+000.0053235.017.13%193.214.03%motif file (matrix) pdf
37HRE(HSF)/HepG2-HSF1-ChIP-Seq(GSE31477)/Homer1e-3-7.186e+000.005488.06.41%62.14.52%motif file (matrix) pdf
38Foxa2(Forkhead)/Liver-Foxa2-ChIP-Seq(GSE25694)/Homer1e-2-6.691e+000.0086297.021.65%253.218.40%motif file (matrix) pdf
39AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer1e-2-6.238e+000.0132684.049.85%632.445.95%motif file (matrix) pdf
40GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer1e-2-6.213e+000.013263.04.59%43.03.13%motif file (matrix) pdf
41Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer1e-2-6.209e+000.01321075.078.35%1033.075.05%motif file (matrix) pdf
42Tcf3(HMG)/mES-Tcf3-ChIP-Seq(GSE11724)/Homer1e-2-5.999e+000.015693.06.78%69.35.03%motif file (matrix) pdf
43Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer1e-2-5.967e+000.0157365.026.60%321.923.38%motif file (matrix) pdf
44STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer1e-2-5.921e+000.0161252.018.37%214.615.59%motif file (matrix) pdf
45REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer1e-2-5.801e+000.017727.01.97%15.91.16%motif file (matrix) pdf
46PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer1e-2-5.762e+000.0180281.020.48%242.717.63%motif file (matrix) pdf
47NFY(CCAAT)/Promoter/Homer1e-2-5.601e+000.0208452.032.94%407.829.63%motif file (matrix) pdf
48VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer1e-2-5.464e+000.0233133.09.69%106.07.70%motif file (matrix) pdf
49Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer1e-2-5.449e+000.0233626.045.63%579.142.07%motif file (matrix) pdf
50TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer1e-2-5.274e+000.0271412.030.03%370.726.93%motif file (matrix) pdf
51Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer1e-2-5.157e+000.0298605.044.10%560.440.72%motif file (matrix) pdf
52Lhx3(Homeobox)/Neuron-Lhx3-ChIP-Seq(GSE31456)/Homer1e-2-5.129e+000.0301537.039.14%493.135.82%motif file (matrix) pdf
53NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer1e-2-5.028e+000.0326337.024.56%299.621.77%motif file (matrix) pdf
54NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer1e-2-4.985e+000.033482.05.98%62.14.51%motif file (matrix) pdf