| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer | 1e-35 | -8.092e+01 | 0.0000 | 170.0 | 27.16% | 60.3 | 9.67% | motif file (matrix) |
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| 2 |  | PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-30 | -6.969e+01 | 0.0000 | 247.0 | 39.46% | 121.9 | 19.54% | motif file (matrix) |
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| 3 |  | ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-19 | -4.408e+01 | 0.0000 | 457.0 | 73.00% | 345.5 | 55.38% | motif file (matrix) |
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| 4 |  | ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer | 1e-18 | -4.317e+01 | 0.0000 | 285.0 | 45.53% | 178.6 | 28.64% | motif file (matrix) |
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| 5 |  | Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer | 1e-17 | -4.000e+01 | 0.0000 | 147.0 | 23.48% | 70.7 | 11.33% | motif file (matrix) |
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| 6 |  | EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer | 1e-15 | -3.629e+01 | 0.0000 | 256.0 | 40.89% | 161.9 | 25.95% | motif file (matrix) |
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| 7 |  | EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer | 1e-15 | -3.526e+01 | 0.0000 | 391.0 | 62.46% | 289.9 | 46.47% | motif file (matrix) |
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| 8 |  | Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer | 1e-14 | -3.354e+01 | 0.0000 | 410.0 | 65.50% | 311.5 | 49.93% | motif file (matrix) |
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| 9 |  | ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-13 | -3.209e+01 | 0.0000 | 428.0 | 68.37% | 332.3 | 53.26% | motif file (matrix) |
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| 10 |  | ETS1(ETS)/Jurkat-ETS1-ChIP-Seq(GSE17954)/Homer | 1e-13 | -3.142e+01 | 0.0000 | 377.0 | 60.22% | 281.0 | 45.04% | motif file (matrix) |
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| 11 |  | STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer | 1e-10 | -2.446e+01 | 0.0000 | 244.0 | 38.98% | 167.5 | 26.84% | motif file (matrix) |
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| 12 |  | GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer | 1e-9 | -2.173e+01 | 0.0000 | 326.0 | 52.08% | 248.2 | 39.79% | motif file (matrix) |
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| 13 |  | MITF(bHLH)/MastCells-MITF-ChIP-Seq(GSE48085)/Homer | 1e-8 | -1.919e+01 | 0.0000 | 255.0 | 40.73% | 186.3 | 29.86% | motif file (matrix) |
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| 14 |  | MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-7 | -1.814e+01 | 0.0000 | 222.0 | 35.46% | 158.7 | 25.44% | motif file (matrix) |
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| 15 |  | IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer | 1e-7 | -1.782e+01 | 0.0000 | 49.0 | 7.83% | 20.4 | 3.27% | motif file (matrix) |
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| 16 |  | PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer | 1e-7 | -1.773e+01 | 0.0000 | 158.0 | 25.24% | 103.6 | 16.60% | motif file (matrix) |
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| 17 |  | EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer | 1e-7 | -1.759e+01 | 0.0000 | 390.0 | 62.30% | 321.0 | 51.45% | motif file (matrix) |
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| 18 |  | RUNX1(Runt)/Jurkat-RUNX1-ChIP-Seq(GSE29180)/Homer | 1e-7 | -1.753e+01 | 0.0000 | 245.0 | 39.14% | 180.6 | 28.95% | motif file (matrix) |
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| 19 |  | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-7 | -1.688e+01 | 0.0000 | 125.0 | 19.97% | 77.9 | 12.49% | motif file (matrix) |
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| 20 |  | PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-7 | -1.662e+01 | 0.0000 | 375.0 | 59.90% | 308.0 | 49.36% | motif file (matrix) |
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| 21 |  | MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer | 1e-6 | -1.588e+01 | 0.0000 | 333.0 | 53.19% | 267.2 | 42.84% | motif file (matrix) |
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| 22 |  | NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer | 1e-6 | -1.584e+01 | 0.0000 | 180.0 | 28.75% | 125.3 | 20.08% | motif file (matrix) |
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| 23 |  | Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-6 | -1.566e+01 | 0.0000 | 147.0 | 23.48% | 97.6 | 15.64% | motif file (matrix) |
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| 24 |  | Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer | 1e-6 | -1.546e+01 | 0.0000 | 332.0 | 53.04% | 268.0 | 42.96% | motif file (matrix) |
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| 25 |  | SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer | 1e-6 | -1.528e+01 | 0.0000 | 604.0 | 96.49% | 569.3 | 91.26% | motif file (matrix) |
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| 26 |  | MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer | 1e-6 | -1.478e+01 | 0.0000 | 289.0 | 46.17% | 227.4 | 36.45% | motif file (matrix) |
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| 27 |  | Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer | 1e-6 | -1.449e+01 | 0.0000 | 356.0 | 56.87% | 293.9 | 47.11% | motif file (matrix) |
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| 28 |  | Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer | 1e-6 | -1.440e+01 | 0.0000 | 238.0 | 38.02% | 180.7 | 28.96% | motif file (matrix) |
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| 29 |  | EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer | 1e-5 | -1.369e+01 | 0.0000 | 209.0 | 33.39% | 155.5 | 24.93% | motif file (matrix) |
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| 30 |  | Stat3+il21(Stat)/CD4-Stat3-ChIP-Seq(GSE19198)/Homer | 1e-5 | -1.327e+01 | 0.0000 | 208.0 | 33.23% | 155.1 | 24.85% | motif file (matrix) |
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| 31 |  | Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.306e+01 | 0.0000 | 498.0 | 79.55% | 445.5 | 71.42% | motif file (matrix) |
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| 32 |  | Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-5 | -1.296e+01 | 0.0000 | 87.0 | 13.90% | 52.3 | 8.39% | motif file (matrix) |
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| 33 |  | IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer | 1e-5 | -1.274e+01 | 0.0000 | 59.0 | 9.42% | 31.1 | 4.98% | motif file (matrix) |
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| 34 |  | Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-5 | -1.271e+01 | 0.0000 | 52.0 | 8.31% | 26.9 | 4.31% | motif file (matrix) |
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| 35 |  | EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer | 1e-5 | -1.264e+01 | 0.0000 | 110.0 | 17.57% | 71.9 | 11.52% | motif file (matrix) |
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| 36 |  | PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer | 1e-5 | -1.207e+01 | 0.0000 | 411.0 | 65.65% | 356.0 | 57.06% | motif file (matrix) |
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| 37 |  | TATA-Box(TBP)/Promoter/Homer | 1e-5 | -1.197e+01 | 0.0000 | 264.0 | 42.17% | 210.5 | 33.74% | motif file (matrix) |
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| 38 |  | STAT1(Stat)/HelaS3-STAT1-ChIP-Seq(GSE12782)/Homer | 1e-5 | -1.152e+01 | 0.0001 | 87.0 | 13.90% | 54.2 | 8.68% | motif file (matrix) |
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| 39 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-4 | -1.122e+01 | 0.0001 | 466.0 | 74.44% | 415.7 | 66.63% | motif file (matrix) |
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| 40 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-4 | -1.106e+01 | 0.0001 | 134.0 | 21.41% | 95.0 | 15.22% | motif file (matrix) |
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| 41 |  | MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-4 | -1.106e+01 | 0.0001 | 71.0 | 11.34% | 43.0 | 6.89% | motif file (matrix) |
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| 42 |  | ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer | 1e-4 | -1.084e+01 | 0.0001 | 29.0 | 4.63% | 12.4 | 1.99% | motif file (matrix) |
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| 43 |  | Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer | 1e-4 | -1.080e+01 | 0.0001 | 48.0 | 7.67% | 25.6 | 4.11% | motif file (matrix) |
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| 44 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-4 | -1.063e+01 | 0.0001 | 157.0 | 25.08% | 115.1 | 18.45% | motif file (matrix) |
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| 45 |  | Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer | 1e-4 | -1.043e+01 | 0.0002 | 332.0 | 53.04% | 280.1 | 44.90% | motif file (matrix) |
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| 46 |  | Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer | 1e-4 | -1.043e+01 | 0.0002 | 536.0 | 85.62% | 494.4 | 79.25% | motif file (matrix) |
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| 47 |  | STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer | 1e-4 | -1.014e+01 | 0.0002 | 99.0 | 15.81% | 66.8 | 10.71% | motif file (matrix) |
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| 48 |  | Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer | 1e-4 | -1.005e+01 | 0.0002 | 215.0 | 34.35% | 169.5 | 27.18% | motif file (matrix) |
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| 49 |  | HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer | 1e-4 | -9.891e+00 | 0.0003 | 129.0 | 20.61% | 92.2 | 14.77% | motif file (matrix) |
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| 50 |  | SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer | 1e-4 | -9.591e+00 | 0.0004 | 305.0 | 48.72% | 257.0 | 41.19% | motif file (matrix) |
pdf |
| 51 |  | AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer | 1e-4 | -9.214e+00 | 0.0005 | 399.0 | 63.74% | 351.5 | 56.35% | motif file (matrix) |
pdf |
| 52 |  | AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer | 1e-3 | -8.757e+00 | 0.0008 | 352.0 | 56.23% | 305.2 | 48.93% | motif file (matrix) |
pdf |
| 53 |  | Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer | 1e-3 | -8.519e+00 | 0.0010 | 323.0 | 51.60% | 278.0 | 44.56% | motif file (matrix) |
pdf |
| 54 |  | Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer | 1e-3 | -8.317e+00 | 0.0012 | 151.0 | 24.12% | 115.8 | 18.55% | motif file (matrix) |
pdf |
| 55 |  | FOXP1(Forkhead)/H9-FOXP1-ChIP-Seq(GSE31006)/Homer | 1e-3 | -8.297e+00 | 0.0012 | 95.0 | 15.18% | 66.9 | 10.72% | motif file (matrix) |
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| 56 |  | RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer | 1e-3 | -8.075e+00 | 0.0015 | 180.0 | 28.75% | 142.0 | 22.76% | motif file (matrix) |
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| 57 |  | FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer | 1e-3 | -8.072e+00 | 0.0015 | 193.0 | 30.83% | 154.2 | 24.71% | motif file (matrix) |
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| 58 |  | FOXA1(Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer | 1e-3 | -7.986e+00 | 0.0015 | 228.0 | 36.42% | 187.6 | 30.07% | motif file (matrix) |
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| 59 |  | AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer | 1e-3 | -7.909e+00 | 0.0016 | 573.0 | 91.53% | 544.0 | 87.19% | motif file (matrix) |
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| 60 |  | Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer | 1e-3 | -7.420e+00 | 0.0026 | 6.0 | 0.96% | 1.2 | 0.18% | motif file (matrix) |
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| 61 |  | STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer | 1e-3 | -6.924e+00 | 0.0043 | 137.0 | 21.88% | 106.1 | 17.01% | motif file (matrix) |
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| 62 |  | Bach1(bZIP)/K562-Bach1-ChIP-Seq(GSE31477)/Homer | 1e-2 | -6.587e+00 | 0.0059 | 15.0 | 2.40% | 6.6 | 1.06% | motif file (matrix) |
pdf |
| 63 |  | ARE(NR)/LNCAP-AR-ChIP-Seq(GSE27824)/Homer | 1e-2 | -6.371e+00 | 0.0072 | 74.0 | 11.82% | 52.7 | 8.45% | motif file (matrix) |
pdf |
| 64 |  | AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer | 1e-2 | -6.237e+00 | 0.0081 | 334.0 | 53.35% | 296.6 | 47.54% | motif file (matrix) |
pdf |
| 65 |  | NFAT(RHD)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer | 1e-2 | -5.937e+00 | 0.0107 | 205.0 | 32.75% | 172.1 | 27.59% | motif file (matrix) |
pdf |
| 66 |  | Foxo1(Forkhead)/RAW-Foxo1-ChIP-Seq(Fan et al.)/Homer | 1e-2 | -5.732e+00 | 0.0130 | 365.0 | 58.31% | 329.1 | 52.76% | motif file (matrix) |
pdf |
| 67 |  | FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer | 1e-2 | -5.432e+00 | 0.0172 | 141.0 | 22.52% | 114.1 | 18.28% | motif file (matrix) |
pdf |
| 68 |  | OCT4-SOX2-TCF-NANOG(POU,Homeobox,HMG)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-2 | -5.402e+00 | 0.0175 | 43.0 | 6.87% | 28.9 | 4.64% | motif file (matrix) |
pdf |
| 69 |  | IRF4(IRF)/GM12878-IRF4-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.375e+00 | 0.0177 | 120.0 | 19.17% | 95.6 | 15.32% | motif file (matrix) |
pdf |
| 70 |  | Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-2 | -5.266e+00 | 0.0195 | 56.0 | 8.95% | 39.9 | 6.40% | motif file (matrix) |
pdf |
| 71 |  | RUNX-AML(Runt)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer | 1e-2 | -5.186e+00 | 0.0208 | 166.0 | 26.52% | 138.7 | 22.24% | motif file (matrix) |
pdf |
| 72 |  | GRE(NR),IR3/A549-GR-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.130e+00 | 0.0217 | 35.0 | 5.59% | 22.3 | 3.58% | motif file (matrix) |
pdf |
| 73 |  | USF1(bHLH)/GM12878-Usf1-ChIP-Seq(GSE32465)/Homer | 1e-2 | -5.056e+00 | 0.0230 | 144.0 | 23.00% | 118.6 | 19.01% | motif file (matrix) |
pdf |
| 74 |  | Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer | 1e-2 | -5.041e+00 | 0.0231 | 431.0 | 68.85% | 399.9 | 64.10% | motif file (matrix) |
pdf |
| 75 |  | RBPJ:Ebox(?,bHLH)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer | 1e-2 | -4.965e+00 | 0.0246 | 135.0 | 21.57% | 110.6 | 17.72% | motif file (matrix) |
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| 76 |  | CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer | 1e-2 | -4.962e+00 | 0.0246 | 163.0 | 26.04% | 136.1 | 21.82% | motif file (matrix) |
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| 77 |  | Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-2 | -4.944e+00 | 0.0246 | 164.0 | 26.20% | 137.6 | 22.06% | motif file (matrix) |
pdf |
| 78 |  | STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer | 1e-2 | -4.873e+00 | 0.0259 | 139.0 | 22.20% | 114.1 | 18.29% | motif file (matrix) |
pdf |
| 79 |  | NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-2 | -4.730e+00 | 0.0295 | 13.0 | 2.08% | 6.6 | 1.06% | motif file (matrix) |
pdf |
| 80 |  | VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer | 1e-2 | -4.608e+00 | 0.0329 | 74.0 | 11.82% | 57.0 | 9.13% | motif file (matrix) |
pdf |