| Rank | Motif | Name | P-value | log P-pvalue | q-value (Benjamini) | # Target Sequences with Motif | % of Targets Sequences with Motif | # Background Sequences with Motif | % of Background Sequences with Motif | Motif File |
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| 1 |  | Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer | 1e-9 | -2.278e+01 | 0.0000 | 66.0 | 15.10% | 28.4 | 6.51% | motif file (matrix) |
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| 2 |  | Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer | 1e-9 | -2.073e+01 | 0.0000 | 309.0 | 70.71% | 247.7 | 56.77% | motif file (matrix) |
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| 3 |  | Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer | 1e-8 | -1.983e+01 | 0.0000 | 49.0 | 11.21% | 19.6 | 4.49% | motif file (matrix) |
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| 4 |  | Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer | 1e-6 | -1.466e+01 | 0.0000 | 304.0 | 69.57% | 253.2 | 58.01% | motif file (matrix) |
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| 5 |  | AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-5 | -1.354e+01 | 0.0001 | 116.0 | 26.54% | 76.4 | 17.51% | motif file (matrix) |
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| 6 |  | BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer | 1e-5 | -1.321e+01 | 0.0001 | 95.0 | 21.74% | 59.8 | 13.70% | motif file (matrix) |
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| 7 |  | Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer | 1e-5 | -1.203e+01 | 0.0002 | 99.0 | 22.65% | 64.7 | 14.82% | motif file (matrix) |
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| 8 |  | NF-E2(bZIP)/K562-NFE2-ChIP-Seq(GSE31477)/Homer | 1e-5 | -1.176e+01 | 0.0003 | 11.0 | 2.52% | 2.2 | 0.51% | motif file (matrix) |
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| 9 |  | Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer | 1e-4 | -1.096e+01 | 0.0005 | 85.0 | 19.45% | 54.8 | 12.55% | motif file (matrix) |
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| 10 |  | TEAD4(TEA)/Tropoblast-Tead4-ChIP-Seq(GSE37350)/Homer | 1e-4 | -1.059e+01 | 0.0007 | 152.0 | 34.78% | 113.7 | 26.06% | motif file (matrix) |
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| 11 |  | Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer | 1e-4 | -1.005e+01 | 0.0010 | 202.0 | 46.22% | 161.5 | 37.01% | motif file (matrix) |
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| 12 |  | E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer | 1e-4 | -9.899e+00 | 0.0011 | 324.0 | 74.14% | 285.3 | 65.37% | motif file (matrix) |
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| 13 |  | GATA(Zf),IR4/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-4 | -9.612e+00 | 0.0014 | 12.0 | 2.75% | 3.6 | 0.82% | motif file (matrix) |
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| 14 |  | TEAD2(TEA)/Py2T-Tead2-ChIP-Seq(GSE55709)/Homer | 1e-4 | -9.511e+00 | 0.0014 | 93.0 | 21.28% | 63.5 | 14.55% | motif file (matrix) |
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| 15 |  | Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer | 1e-4 | -9.246e+00 | 0.0017 | 367.0 | 83.98% | 334.4 | 76.63% | motif file (matrix) |
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| 16 |  | TEAD(TEA)/Fibroblast-PU.1-ChIP-Seq(Unpublished)/Homer | 1e-3 | -8.500e+00 | 0.0034 | 99.0 | 22.65% | 70.8 | 16.23% | motif file (matrix) |
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| 17 |  | Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer | 1e-3 | -8.322e+00 | 0.0038 | 129.0 | 29.52% | 97.9 | 22.44% | motif file (matrix) |
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| 18 |  | AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer | 1e-3 | -7.684e+00 | 0.0067 | 389.0 | 89.02% | 363.4 | 83.27% | motif file (matrix) |
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| 19 |  | Nrf2(bZIP)/Lymphoblast-Nrf2-ChIP-Seq(GSE37589)/Homer | 1e-3 | -7.440e+00 | 0.0082 | 6.0 | 1.37% | 1.4 | 0.31% | motif file (matrix) |
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| 20 |  | Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer | 1e-3 | -7.421e+00 | 0.0082 | 40.0 | 9.15% | 23.7 | 5.44% | motif file (matrix) |
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| 21 |  | Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer | 1e-3 | -7.355e+00 | 0.0082 | 60.0 | 13.73% | 40.0 | 9.16% | motif file (matrix) |
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| 22 |  | STAT6(Stat)/Macrophage-Stat6-ChIP-Seq(GSE38377)/Homer | 1e-3 | -7.024e+00 | 0.0107 | 76.0 | 17.39% | 53.4 | 12.23% | motif file (matrix) |
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| 23 |  | PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer | 1e-3 | -6.988e+00 | 0.0107 | 100.0 | 22.88% | 74.8 | 17.14% | motif file (matrix) |
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| 24 |  | ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer | 1e-2 | -6.860e+00 | 0.0115 | 263.0 | 60.18% | 230.1 | 52.74% | motif file (matrix) |
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| 25 |  | GATA3(Zf),DR8/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -6.844e+00 | 0.0115 | 10.0 | 2.29% | 3.2 | 0.73% | motif file (matrix) |
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| 26 |  | Lhx2(Homeobox)/HFSC-Lhx2-ChIP-Seq(GSE48068)/Homer | 1e-2 | -6.830e+00 | 0.0115 | 113.0 | 25.86% | 86.5 | 19.83% | motif file (matrix) |
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| 27 |  | NFkB-p50,p52(RHD)/Monocyte-p50-ChIP-Chip(Schreiber et al.)/Homer | 1e-2 | -6.667e+00 | 0.0124 | 55.0 | 12.59% | 36.6 | 8.39% | motif file (matrix) |
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| 28 |  | p53(p53)/Saos-p53-ChIP-Seq(GSE15780)/Homer | 1e-2 | -6.556e+00 | 0.0129 | 21.0 | 4.81% | 10.2 | 2.33% | motif file (matrix) |
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| 29 |  | p53(p53)/Saos-p53-ChIP-Seq/Homer | 1e-2 | -6.556e+00 | 0.0129 | 21.0 | 4.81% | 10.2 | 2.33% | motif file (matrix) |
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| 30 |  | Unknown(Homeobox)/Limb-p300-ChIP-Seq/Homer | 1e-2 | -6.547e+00 | 0.0129 | 83.0 | 18.99% | 60.9 | 13.95% | motif file (matrix) |
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| 31 |  | STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer | 1e-2 | -6.512e+00 | 0.0129 | 76.0 | 17.39% | 54.3 | 12.45% | motif file (matrix) |
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| 32 |  | STAT5(Stat)/mCD4+-Stat5-ChIP-Seq(GSE12346)/Homer | 1e-2 | -6.494e+00 | 0.0129 | 51.0 | 11.67% | 33.5 | 7.68% | motif file (matrix) |
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| 33 |  | Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer | 1e-2 | -6.473e+00 | 0.0129 | 41.0 | 9.38% | 25.6 | 5.86% | motif file (matrix) |
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| 34 |  | STAT4(Stat)/CD4-Stat4-ChIP-Seq(GSE22104)/Homer | 1e-2 | -6.327e+00 | 0.0139 | 141.0 | 32.27% | 113.4 | 25.98% | motif file (matrix) |
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| 35 |  | MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer | 1e-2 | -6.225e+00 | 0.0149 | 131.0 | 29.98% | 104.7 | 24.00% | motif file (matrix) |
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| 36 |  | GRHL2(CP2)/HBE-GRHL2-ChIP-Seq(GSE46194)/Homer | 1e-2 | -6.144e+00 | 0.0153 | 67.0 | 15.33% | 47.2 | 10.81% | motif file (matrix) |
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| 37 |  | HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer | 1e-2 | -6.144e+00 | 0.0153 | 67.0 | 15.33% | 47.3 | 10.84% | motif file (matrix) |
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| 38 |  | EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer | 1e-2 | -6.086e+00 | 0.0158 | 123.0 | 28.15% | 97.2 | 22.27% | motif file (matrix) |
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| 39 |  | EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer | 1e-2 | -5.908e+00 | 0.0184 | 78.0 | 17.85% | 57.5 | 13.18% | motif file (matrix) |
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| 40 |  | GATA:SCL(Zf,bHLH)/Ter119-SCL-ChIP-Seq(GSE18720)/Homer | 1e-2 | -5.663e+00 | 0.0229 | 17.0 | 3.89% | 9.0 | 2.06% | motif file (matrix) |
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| 41 |  | RUNX(Runt)/HPC7-Runx1-ChIP-Seq(GSE22178)/Homer | 1e-2 | -5.475e+00 | 0.0270 | 107.0 | 24.49% | 84.5 | 19.37% | motif file (matrix) |
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| 42 |  | Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer | 1e-2 | -5.473e+00 | 0.0270 | 200.0 | 45.77% | 172.1 | 39.45% | motif file (matrix) |
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| 43 |  | GLI3(Zf)/Limb-GLI3-ChIP-Chip(GSE11077)/Homer | 1e-2 | -5.424e+00 | 0.0271 | 44.0 | 10.07% | 29.7 | 6.81% | motif file (matrix) |
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| 44 |  | GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer | 1e-2 | -5.333e+00 | 0.0290 | 158.0 | 36.16% | 132.4 | 30.33% | motif file (matrix) |
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| 45 |  | RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer | 1e-2 | -5.237e+00 | 0.0312 | 115.0 | 26.32% | 92.0 | 21.08% | motif file (matrix) |
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| 46 |  | ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer | 1e-2 | -5.100e+00 | 0.0350 | 267.0 | 61.10% | 240.5 | 55.12% | motif file (matrix) |
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| 47 |  | PR(NR)/T47D-PR-ChIP-Seq(GSE31130)/Homer | 1e-2 | -5.089e+00 | 0.0350 | 264.0 | 60.41% | 237.2 | 54.36% | motif file (matrix) |
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| 48 |  | Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer | 1e-2 | -5.087e+00 | 0.0350 | 77.0 | 17.62% | 58.5 | 13.40% | motif file (matrix) |
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| 49 |  | HRE(HSF)/Striatum-HSF1-ChIP-Seq(GSE38000)/Homer | 1e-2 | -4.962e+00 | 0.0377 | 32.0 | 7.32% | 20.7 | 4.75% | motif file (matrix) |
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| 50 |  | MafK(bZIP)/C2C12-MafK-ChIP-Seq(GSE36030)/Homer | 1e-2 | -4.939e+00 | 0.0377 | 43.0 | 9.84% | 29.4 | 6.74% | motif file (matrix) |
pdf |
| 51 |  | Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer | 1e-2 | -4.939e+00 | 0.0377 | 43.0 | 9.84% | 29.8 | 6.84% | motif file (matrix) |
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| 52 |  | Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer | 1e-2 | -4.915e+00 | 0.0377 | 199.0 | 45.54% | 173.1 | 39.67% | motif file (matrix) |
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| 53 |  | Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer | 1e-2 | -4.737e+00 | 0.0436 | 67.0 | 15.33% | 50.4 | 11.55% | motif file (matrix) |
pdf |
| 54 |  | CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer | 1e-2 | -4.714e+00 | 0.0438 | 86.0 | 19.68% | 67.3 | 15.43% | motif file (matrix) |
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| 55 |  | Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer | 1e-2 | -4.644e+00 | 0.0462 | 88.0 | 20.14% | 69.4 | 15.90% | motif file (matrix) |
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