Homer Known Motif Enrichment Results (/state/partition1/dave/CAGEd_oPOSSUM/analysis/mouse/results/FF_1322-23E9/homer_output)

Known Motif Enrichment Results (txt file)
Total Target Sequences = 499, Total Background Sequences = 496
RankMotifNameP-valuelog P-pvalueq-value (Benjamini)# Target Sequences with Motif% of Targets Sequences with Motif# Background Sequences with Motif% of Background Sequences with MotifMotif File PDF
1HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer1e-17-3.985e+010.0000179.035.87%96.319.41%motif file (matrix) pdf
2KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer1e-11-2.584e+010.0000400.080.16%329.666.44%motif file (matrix) pdf
3Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer1e-9-2.206e+010.000048.09.62%17.53.53%motif file (matrix) pdf
4FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer1e-7-1.835e+010.0000119.023.85%71.114.33%motif file (matrix) pdf
5E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer1e-7-1.816e+010.0000358.071.74%296.959.84%motif file (matrix) pdf
6E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer1e-7-1.809e+010.0000356.071.34%294.759.40%motif file (matrix) pdf
7Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer1e-7-1.761e+010.0000178.035.67%122.224.64%motif file (matrix) pdf
8Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer1e-7-1.651e+010.0000160.032.06%108.821.93%motif file (matrix) pdf
9Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer1e-6-1.457e+010.0000352.070.54%297.159.88%motif file (matrix) pdf
10Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer1e-5-1.372e+010.0000128.025.65%85.017.14%motif file (matrix) pdf
11Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer1e-5-1.349e+010.0000192.038.48%142.128.65%motif file (matrix) pdf
12Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer1e-5-1.348e+010.0000375.075.15%324.765.45%motif file (matrix) pdf
13Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer1e-5-1.174e+010.0002304.060.92%254.551.29%motif file (matrix) pdf
14Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer1e-5-1.152e+010.0002253.050.70%204.241.17%motif file (matrix) pdf
15EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer1e-4-1.124e+010.000291.018.24%58.611.82%motif file (matrix) pdf
16RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer1e-4-1.092e+010.0003280.056.11%232.646.88%motif file (matrix) pdf
17NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer1e-4-1.057e+010.0004196.039.28%152.930.83%motif file (matrix) pdf
18SpiB(ETS)/OCILY3-SPIB-ChIP-Seq(GSE56857)/Homer1e-4-1.000e+010.000760.012.02%35.17.08%motif file (matrix) pdf
19MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer1e-4-9.517e+000.0010258.051.70%214.943.32%motif file (matrix) pdf
20EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer1e-4-9.233e+000.001375.015.03%48.79.81%motif file (matrix) pdf
21Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer1e-3-8.286e+000.003252.010.42%31.06.25%motif file (matrix) pdf
22Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer1e-3-8.213e+000.0033132.026.45%99.119.97%motif file (matrix) pdf
23NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer1e-3-8.005e+000.0038118.023.65%87.817.69%motif file (matrix) pdf
24Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer1e-3-7.980e+000.0038189.037.88%152.930.81%motif file (matrix) pdf
25Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer1e-3-7.516e+000.0057163.032.67%129.326.07%motif file (matrix) pdf
26EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer1e-3-7.493e+000.0057151.030.26%118.323.85%motif file (matrix) pdf
27ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer1e-3-7.386e+000.006119.03.81%8.51.71%motif file (matrix) pdf
28Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer1e-3-7.293e+000.006449.09.82%30.66.17%motif file (matrix) pdf
29PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer1e-3-6.937e+000.0088240.048.10%204.441.21%motif file (matrix) pdf
30Sp1(Zf)/Promoter/Homer1e-2-6.869e+000.0091160.032.06%128.625.91%motif file (matrix) pdf
31NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer1e-2-6.472e+000.0132344.068.94%310.362.55%motif file (matrix) pdf
32TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer1e-2-6.075e+000.019043.08.62%27.35.51%motif file (matrix) pdf
33VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer1e-2-5.820e+000.023745.09.02%29.75.98%motif file (matrix) pdf
34PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer1e-2-5.702e+000.025920.04.01%10.42.09%motif file (matrix) pdf
35ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer1e-2-5.678e+000.0259189.037.88%159.732.19%motif file (matrix) pdf
36Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer1e-2-5.672e+000.0259436.087.37%411.983.03%motif file (matrix) pdf
37Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer1e-2-5.654e+000.0259171.034.27%142.128.65%motif file (matrix) pdf
38Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer1e-2-5.641e+000.0259297.059.52%265.953.60%motif file (matrix) pdf
39EBNA1(EBV virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer1e-2-5.598e+000.02595.01.00%0.80.16%motif file (matrix) pdf
40NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer1e-2-5.551e+000.025937.07.41%23.64.75%motif file (matrix) pdf
41Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer1e-2-5.447e+000.0277430.086.17%405.381.70%motif file (matrix) pdf
42CRX(Homeobox)/Retina-Crx-ChIP-Seq(GSE20012)/Homer1e-2-5.331e+000.0304343.068.74%313.163.12%motif file (matrix) pdf
43Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer1e-2-5.303e+000.0305367.073.55%339.068.33%motif file (matrix) pdf
44MafA(bZIP)/Islet-MafA-ChIP-Seq(GSE30298)/Homer1e-2-5.036e+000.0390173.034.67%146.229.47%motif file (matrix) pdf
45ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer1e-2-4.959e+000.0412326.065.33%297.159.89%motif file (matrix) pdf
46SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer1e-2-4.908e+000.0424252.050.50%223.845.12%motif file (matrix) pdf
47EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer1e-2-4.624e+000.0551267.053.51%239.648.31%motif file (matrix) pdf
48Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer1e-2-4.622e+000.055159.011.82%43.88.82%motif file (matrix) pdf
49Brachyury(T-box)/Mesoendoderm-Brachyury-ChIP-exo(GSE54963)/Homer1e-2-4.619e+000.055152.010.42%37.37.51%motif file (matrix) pdf