Homer Known Motif Enrichment Results (/state/partition1/dave/CAGEd_oPOSSUM/analysis/mouse/results/FF_1352-25E3/homer_output)

Known Motif Enrichment Results (txt file)
Total Target Sequences = 607, Total Background Sequences = 603
RankMotifNameP-valuelog P-pvalueq-value (Benjamini)# Target Sequences with Motif% of Targets Sequences with Motif# Background Sequences with Motif% of Background Sequences with MotifMotif File PDF
1KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer1e-20-4.749e+010.0000497.081.88%388.764.51%motif file (matrix) pdf
2HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer1e-15-3.534e+010.0000211.034.76%124.720.69%motif file (matrix) pdf
3E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer1e-12-2.954e+010.0000452.074.46%363.260.28%motif file (matrix) pdf
4Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer1e-12-2.835e+010.000048.07.91%14.32.37%motif file (matrix) pdf
5Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer1e-10-2.468e+010.0000223.036.74%148.424.63%motif file (matrix) pdf
6NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer1e-8-2.037e+010.0000430.070.84%356.859.21%motif file (matrix) pdf
7ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer1e-8-2.031e+010.000028.04.61%7.61.26%motif file (matrix) pdf
8PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer1e-7-1.774e+010.0000298.049.09%229.338.05%motif file (matrix) pdf
9Sp1(Zf)/Promoter/Homer1e-7-1.755e+010.0000221.036.41%158.926.37%motif file (matrix) pdf
10Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer1e-7-1.701e+010.0000221.036.41%159.126.41%motif file (matrix) pdf
11Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer1e-7-1.626e+010.0000462.076.11%399.966.38%motif file (matrix) pdf
12RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer1e-6-1.408e+010.0000346.057.00%284.947.29%motif file (matrix) pdf
13Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer1e-5-1.303e+010.0000149.024.55%103.617.19%motif file (matrix) pdf
14EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer1e-5-1.252e+010.0001337.055.52%279.246.35%motif file (matrix) pdf
15Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer1e-5-1.237e+010.0001243.040.03%189.231.40%motif file (matrix) pdf
16E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer1e-5-1.214e+010.0001436.071.83%381.263.27%motif file (matrix) pdf
17Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer1e-5-1.200e+010.0001305.050.25%249.341.37%motif file (matrix) pdf
18ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer1e-5-1.186e+010.0001389.064.09%333.855.40%motif file (matrix) pdf
19Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer1e-4-1.114e+010.000270.011.53%41.06.81%motif file (matrix) pdf
20NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer1e-4-1.084e+010.000317.02.80%5.90.97%motif file (matrix) pdf
21EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer1e-4-1.074e+010.000398.016.14%64.710.75%motif file (matrix) pdf
22GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-4-1.072e+010.0003287.047.28%235.039.00%motif file (matrix) pdf
23AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer1e-4-1.065e+010.0003359.059.14%306.650.89%motif file (matrix) pdf
24Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer1e-4-1.059e+010.0003407.067.05%355.659.01%motif file (matrix) pdf
25AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer1e-4-1.050e+010.0003307.050.58%255.742.44%motif file (matrix) pdf
26Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer1e-4-9.869e+000.0005538.088.63%499.582.90%motif file (matrix) pdf
27Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer1e-4-9.760e+000.0006154.025.37%114.719.03%motif file (matrix) pdf
28p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer1e-4-9.368e+000.00087.01.15%0.80.13%motif file (matrix) pdf
29TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer1e-3-9.050e+000.001160.09.88%36.76.09%motif file (matrix) pdf
30Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer1e-3-8.678e+000.0015336.055.35%289.047.97%motif file (matrix) pdf
31Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer1e-3-8.531e+000.001785.014.00%57.59.54%motif file (matrix) pdf
32Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer1e-3-7.973e+000.0028485.079.90%445.273.89%motif file (matrix) pdf
33Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer1e-3-7.786e+000.0033124.020.43%92.215.31%motif file (matrix) pdf
34Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer1e-3-7.579e+000.0040428.070.51%386.164.07%motif file (matrix) pdf
35NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer1e-3-7.077e+000.0064238.039.21%199.733.14%motif file (matrix) pdf
36Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer1e-3-7.070e+000.0064296.048.76%255.842.45%motif file (matrix) pdf
37Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer1e-3-7.058e+000.0064203.033.44%166.927.71%motif file (matrix) pdf
38AMYB(HTH)/Testes-AMYB-ChIP-Seq(GSE44588)/Homer1e-2-6.898e+000.0070347.057.17%306.750.91%motif file (matrix) pdf
39EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer1e-2-6.621e+000.009090.014.83%65.110.80%motif file (matrix) pdf
40Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer1e-2-6.528e+000.009665.010.71%44.37.35%motif file (matrix) pdf
41E2F(E2F)/Hela-CellCycle-Expression/Homer1e-2-6.446e+000.010221.03.46%10.71.77%motif file (matrix) pdf
42Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer1e-2-6.362e+000.0108191.031.47%157.326.11%motif file (matrix) pdf
43CHR(?)/Hela-CellCycle-Expression/Homer1e-2-6.357e+000.0108120.019.77%92.315.31%motif file (matrix) pdf
44Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer1e-2-6.109e+000.0133224.036.90%189.931.52%motif file (matrix) pdf
45Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer1e-2-6.077e+000.0135539.088.80%510.284.68%motif file (matrix) pdf
46Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer1e-2-6.067e+000.0135530.087.31%500.683.09%motif file (matrix) pdf
47IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer1e-2-6.028e+000.013538.06.26%23.23.85%motif file (matrix) pdf
48Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer1e-2-5.915e+000.0148474.078.09%440.773.14%motif file (matrix) pdf
49Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer1e-2-5.897e+000.0148144.023.72%115.819.22%motif file (matrix) pdf
50BMYB(HTH)/Hela-BMYB-ChIP-Seq(GSE27030)/Homer1e-2-5.875e+000.0148326.053.71%289.248.00%motif file (matrix) pdf
51Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer1e-2-5.860e+000.0148542.089.29%514.985.47%motif file (matrix) pdf
52NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer1e-2-5.761e+000.0160149.024.55%120.620.02%motif file (matrix) pdf
53Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer1e-2-5.721e+000.0163401.066.06%365.260.61%motif file (matrix) pdf
54RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer1e-2-5.701e+000.0163195.032.13%163.127.08%motif file (matrix) pdf
55AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer1e-2-5.412e+000.0214164.027.02%135.222.43%motif file (matrix) pdf
56Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer1e-2-5.042e+000.030580.013.18%60.310.01%motif file (matrix) pdf
57Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer1e-2-4.987e+000.0316399.065.73%366.260.78%motif file (matrix) pdf
58NFY(CCAAT)/Promoter/Homer1e-2-4.898e+000.0340215.035.42%185.730.82%motif file (matrix) pdf
59IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer1e-2-4.869e+000.034442.06.92%28.84.78%motif file (matrix) pdf
60ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer1e-2-4.836e+000.0349247.040.69%216.135.87%motif file (matrix) pdf