Homer Known Motif Enrichment Results (/state/partition1/dave/CAGEd_oPOSSUM/analysis/mouse/results/FF_178-9A3/homer_output)

Known Motif Enrichment Results (txt file)
Total Target Sequences = 636, Total Background Sequences = 634
RankMotifNameP-valuelog P-pvalueq-value (Benjamini)# Target Sequences with Motif% of Targets Sequences with Motif# Background Sequences with Motif% of Background Sequences with MotifMotif File PDF
1HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer1e-24-5.597e+010.0000220.034.59%111.817.64%motif file (matrix) pdf
2KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer1e-14-3.421e+010.0000515.080.97%424.066.88%motif file (matrix) pdf
3Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer1e-11-2.668e+010.0000247.038.84%166.926.33%motif file (matrix) pdf
4E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer1e-11-2.633e+010.0000449.070.60%363.157.28%motif file (matrix) pdf
5E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer1e-10-2.350e+010.0000472.074.21%393.862.12%motif file (matrix) pdf
6Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer1e-8-2.016e+010.000053.08.33%21.93.46%motif file (matrix) pdf
7Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer1e-8-2.000e+010.0000218.034.28%152.023.97%motif file (matrix) pdf
8IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer1e-7-1.764e+010.000044.06.92%17.22.71%motif file (matrix) pdf
9Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer1e-7-1.756e+010.0000440.069.18%371.158.55%motif file (matrix) pdf
10Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer1e-6-1.610e+010.0000491.077.20%429.867.80%motif file (matrix) pdf
11Sp1(Zf)/Promoter/Homer1e-6-1.573e+010.0000238.037.42%177.828.05%motif file (matrix) pdf
12Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer1e-6-1.551e+010.0000184.028.93%129.320.40%motif file (matrix) pdf
13RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer1e-6-1.470e+010.0000360.056.60%296.746.80%motif file (matrix) pdf
14Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer1e-6-1.449e+010.000060.09.43%30.94.87%motif file (matrix) pdf
15NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer1e-6-1.409e+010.0000144.022.64%97.215.33%motif file (matrix) pdf
16EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer1e-5-1.338e+010.0000109.017.14%69.811.01%motif file (matrix) pdf
17Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer1e-5-1.336e+010.0000507.079.72%453.971.61%motif file (matrix) pdf
18Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer1e-5-1.292e+010.0000558.087.74%512.180.79%motif file (matrix) pdf
19GATA3(Zf)/iTreg-Gata3-ChIP-Seq(GSE20898)/Homer1e-5-1.204e+010.0001300.047.17%244.638.58%motif file (matrix) pdf
20PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer1e-5-1.187e+010.0001315.049.53%259.040.86%motif file (matrix) pdf
21Gata4(Zf)/Heart-Gata4-ChIP-Seq(GSE35151)/Homer1e-4-1.106e+010.0002233.036.64%183.228.90%motif file (matrix) pdf
22Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer1e-4-1.069e+010.0003147.023.11%106.616.82%motif file (matrix) pdf
23Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer1e-4-1.025e+010.0004353.055.50%301.147.50%motif file (matrix) pdf
24Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer1e-4-1.020e+010.0004303.047.64%252.739.86%motif file (matrix) pdf
25IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer1e-4-9.839e+000.000648.07.55%26.44.16%motif file (matrix) pdf
26Srebp2(bHLH)/HepG2-Srebp2-ChIP-Seq(GSE31477)/Homer1e-3-9.179e+000.001051.08.02%29.84.70%motif file (matrix) pdf
27Gata2(Zf)/K562-GATA2-ChIP-Seq(GSE18829)/Homer1e-3-9.029e+000.0012153.024.06%115.318.18%motif file (matrix) pdf
28TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer1e-3-8.961e+000.001261.09.59%37.15.85%motif file (matrix) pdf
29Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer1e-3-8.664e+000.0016376.059.12%329.351.95%motif file (matrix) pdf
30NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer1e-3-8.419e+000.001915.02.36%5.70.90%motif file (matrix) pdf
31ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer1e-3-7.738e+000.003734.05.35%18.12.85%motif file (matrix) pdf
32STAT6(Stat)/CD4-Stat6-ChIP-Seq(GSE22104)/Homer1e-3-7.358e+000.0053126.019.81%95.615.07%motif file (matrix) pdf
33SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer1e-3-7.309e+000.0054314.049.37%272.643.00%motif file (matrix) pdf
34Nkx6.1(Homeobox)/Islet-Nkx6.1-ChIP-Seq(GSE40975)/Homer1e-3-7.201e+000.0058363.057.08%321.250.66%motif file (matrix) pdf
35Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer1e-2-6.663e+000.0096356.055.97%316.549.93%motif file (matrix) pdf
36VDR(NR),DR3/GM10855-VDR+vitD-ChIP-Seq(GSE22484)/Homer1e-2-6.594e+000.010065.010.22%44.67.03%motif file (matrix) pdf
37Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer1e-2-6.562e+000.0101300.047.17%261.841.30%motif file (matrix) pdf
38PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer1e-2-6.529e+000.0101173.027.20%140.222.12%motif file (matrix) pdf
39Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer1e-2-6.393e+000.0113131.020.60%102.216.13%motif file (matrix) pdf
40EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer1e-2-6.370e+000.0113180.028.30%147.923.34%motif file (matrix) pdf
41Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer1e-2-6.367e+000.011388.013.84%64.710.21%motif file (matrix) pdf
42NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer1e-2-6.295e+000.0116238.037.42%202.932.02%motif file (matrix) pdf
43ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer1e-2-6.140e+000.0132252.039.62%216.234.11%motif file (matrix) pdf
44TATA-Box(TBP)/Promoter/Homer1e-2-5.862e+000.0171287.045.13%252.039.75%motif file (matrix) pdf
45Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer1e-2-5.847e+000.0171525.082.55%494.277.96%motif file (matrix) pdf
46Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer1e-2-5.759e+000.018169.010.85%49.47.79%motif file (matrix) pdf
47FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer1e-2-5.722e+000.0184154.024.21%125.719.82%motif file (matrix) pdf
48Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer1e-2-5.611e+000.0201424.066.67%389.861.49%motif file (matrix) pdf
49Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer1e-2-5.532e+000.0213149.023.43%121.819.21%motif file (matrix) pdf
50MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer1e-2-5.469e+000.0223322.050.63%287.745.39%motif file (matrix) pdf
51Fox:Ebox(Forkhead,bHLH)/Panc1-Foxa2-ChIP-Seq(GSE47459)/Homer1e-2-5.427e+000.0228221.034.75%189.729.93%motif file (matrix) pdf
52Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer1e-2-5.375e+000.023575.011.79%55.58.76%motif file (matrix) pdf
53Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer1e-2-5.288e+000.0252549.086.32%522.082.35%motif file (matrix) pdf
54ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer1e-2-5.132e+000.028922.03.46%12.61.99%motif file (matrix) pdf
55Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer1e-2-5.094e+000.0294415.065.25%382.560.34%motif file (matrix) pdf
56CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer1e-2-5.029e+000.0309132.020.75%107.216.91%motif file (matrix) pdf
57NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer1e-2-4.989e+000.031547.07.39%33.05.21%motif file (matrix) pdf
58Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer1e-2-4.855e+000.0355228.035.85%198.131.26%motif file (matrix) pdf
59Pitx1(Homeobox)/Chicken-Pitx1-ChIP-Seq(GSE38910)/Homer1e-2-4.807e+000.0366563.088.52%539.385.07%motif file (matrix) pdf
60NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer1e-2-4.800e+000.0366444.069.81%413.565.23%motif file (matrix) pdf
61Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer1e-2-4.765e+000.0369174.027.36%147.523.27%motif file (matrix) pdf