Homer Known Motif Enrichment Results (/state/partition1/dave/CAGEd_oPOSSUM/analysis/mouse/results/FF_860-29I3/homer_output)

Known Motif Enrichment Results (txt file)
Total Target Sequences = 1049, Total Background Sequences = 1050
RankMotifNameP-valuelog P-pvalueq-value (Benjamini)# Target Sequences with Motif% of Targets Sequences with Motif# Background Sequences with Motif% of Background Sequences with MotifMotif File PDF
1KLF5(Zf)/LoVo-KLF5-ChIP-Seq(GSE49402)/Homer1e-22-5.181e+010.0000870.082.94%731.369.64%motif file (matrix) pdf
2HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer1e-22-5.140e+010.0000341.032.51%206.119.62%motif file (matrix) pdf
3Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer1e-20-4.813e+010.0000423.040.32%281.426.80%motif file (matrix) pdf
4ISRE(IRF)/ThioMac-LPS-Expression(GSE23622)/Homer1e-10-2.347e+010.000063.06.01%25.82.46%motif file (matrix) pdf
5Maz(Zf)/HepG2-Maz-ChIP-Seq(GSE31477)/Homer1e-9-2.292e+010.0000826.078.74%735.370.02%motif file (matrix) pdf
6Hnf1(Homeobox)/Liver-Foxa2-Chip-Seq(GSE25694)/Homer1e-9-2.250e+010.000062.05.91%25.62.44%motif file (matrix) pdf
7ELF5(ETS)/T47D-ELF5-ChIP-Seq(GSE30407)/Homer1e-9-2.222e+010.0000426.040.61%330.431.46%motif file (matrix) pdf
8EHF(ETS)/LoVo-EHF-ChIP-Seq(GSE49402)/Homer1e-9-2.149e+010.0000605.057.67%506.448.22%motif file (matrix) pdf
9EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer1e-9-2.148e+010.0000178.016.97%112.810.74%motif file (matrix) pdf
10E2A(bHLH)/proBcell-E2A-ChIP-Seq(GSE21978)/Homer1e-8-2.040e+010.0000719.068.54%626.459.65%motif file (matrix) pdf
11FXR(NR),IR1/Liver-FXR-ChIP-Seq(Chong et al.)/Homer1e-8-2.033e+010.0000247.023.55%172.316.41%motif file (matrix) pdf
12NF1(CTF)/LNCAP-NF1-ChIP-Seq(Unpublished)/Homer1e-8-1.910e+010.0000242.023.07%170.516.24%motif file (matrix) pdf
13Sp1(Zf)/Promoter/Homer1e-8-1.909e+010.0000458.043.66%368.335.08%motif file (matrix) pdf
14PU.1(ETS)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer1e-7-1.807e+010.0000276.026.31%202.319.27%motif file (matrix) pdf
15Myf5(bHLH)/GM-Myf5-ChIP-Seq(GSE24852)/Homer1e-7-1.755e+010.0000368.035.08%288.027.42%motif file (matrix) pdf
16E2A(bHLH),near_PU.1/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer1e-7-1.740e+010.0000734.069.97%650.461.93%motif file (matrix) pdf
17SPDEF(ETS)/VCaP-SPDEF-ChIP-Seq(SRA014231)/Homer1e-7-1.686e+010.0000533.050.81%447.542.62%motif file (matrix) pdf
18Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer1e-7-1.637e+010.0000502.047.86%418.639.86%motif file (matrix) pdf
19MyoG(bHLH)/C2C12-MyoG-ChIP-Seq(GSE36024)/Homer1e-6-1.553e+010.0000527.050.24%445.642.43%motif file (matrix) pdf
20ERG(ETS)/VCaP-ERG-ChIP-Seq(GSE14097)/Homer1e-5-1.306e+010.0000674.064.25%601.057.23%motif file (matrix) pdf
21BATF(bZIP)/Th17-BATF-ChIP-Seq(GSE39756)/Homer1e-5-1.208e+010.0001248.023.64%191.118.20%motif file (matrix) pdf
22PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer1e-5-1.172e+010.0001490.046.71%421.540.14%motif file (matrix) pdf
23GABPA(ETS)/Jurkat-GABPa-ChIP-Seq(GSE17954)/Homer1e-5-1.159e+010.0001516.049.19%447.042.57%motif file (matrix) pdf
24AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer1e-4-1.123e+010.0001552.052.62%484.046.09%motif file (matrix) pdf
25EBF1(EBF)/Near-E2A-ChIP-Seq(GSE21512)/Homer1e-4-1.042e+010.0003572.054.53%507.948.36%motif file (matrix) pdf
26RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer1e-4-9.910e+000.0005579.055.20%516.449.18%motif file (matrix) pdf
27Tbet(T-box)/CD8-Tbet-ChIP-Seq(GSE33802)/Homer1e-4-9.891e+000.0005379.036.13%320.430.51%motif file (matrix) pdf
28Atf3(bZIP)/GBM-ATF3-ChIP-Seq(GSE33912)/Homer1e-4-9.879e+000.0005250.023.83%199.919.04%motif file (matrix) pdf
29AP-1(bZIP)/ThioMac-PU.1-ChIP-Seq(GSE21512)/Homer1e-4-9.715e+000.0005283.026.98%230.521.95%motif file (matrix) pdf
30Fosl2(bZIP)/3T3L1-Fosl2-ChIP-Seq(GSE56872)/Homer1e-4-9.676e+000.0006149.014.20%109.710.45%motif file (matrix) pdf
31Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer1e-4-9.669e+000.0006192.018.30%148.014.09%motif file (matrix) pdf
32ETV1(ETS)/GIST48-ETV1-ChIP-Seq(GSE22441)/Homer1e-4-9.414e+000.0007659.062.82%599.657.10%motif file (matrix) pdf
33Ptf1a(bHLH)/Panc1-Ptf1a-ChIP-Seq(GSE47459)/Homer1e-4-9.380e+000.0007897.085.51%851.881.12%motif file (matrix) pdf
34EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer1e-4-9.261e+000.0007306.029.17%254.024.19%motif file (matrix) pdf
35NFAT:AP1(RHD,bZIP)/Jurkat-NFATC1-ChIP-Seq(Jolma et al.)/Homer1e-4-9.256e+000.000768.06.48%42.44.04%motif file (matrix) pdf
36Ascl1(bHLH)/NeuralTubes-Ascl1-ChIP-Seq(GSE55840)/Homer1e-3-8.981e+000.0009704.067.11%647.861.68%motif file (matrix) pdf
37ELF1(ETS)/Jurkat-ELF1-ChIP-Seq(SRA014231)/Homer1e-3-8.968e+000.0009389.037.08%333.731.78%motif file (matrix) pdf
38Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer1e-3-8.373e+000.0016327.031.17%276.726.35%motif file (matrix) pdf
39Fra1(bZIP)/BT549-Fra1-ChIP-Seq(GSE46166)/Homer1e-3-8.305e+000.0017212.020.21%169.616.16%motif file (matrix) pdf
40PU.1-IRF(ETS:IRF)/Bcell-PU.1-ChIP-Seq(GSE21512)/Homer1e-3-8.210e+000.0018557.053.10%501.747.78%motif file (matrix) pdf
41Gata1(Zf)/K562-GATA1-ChIP-Seq(GSE18829)/Homer1e-3-7.988e+000.0022237.022.59%193.618.43%motif file (matrix) pdf
42TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer1e-3-7.813e+000.002593.08.87%65.06.19%motif file (matrix) pdf
43IRF2(IRF)/Erythroblas-IRF2-ChIP-Seq(GSE36985)/Homer1e-3-7.696e+000.002882.07.82%56.15.35%motif file (matrix) pdf
44Ets1-distal(ETS)/CD4+-PolII-ChIP-Seq(Barski et al.)/Homer1e-3-7.635e+000.0029150.014.30%115.410.99%motif file (matrix) pdf
45Fli1(ETS)/CD8-FLI-ChIP-Seq(GSE20898)/Homer1e-3-7.334e+000.0038582.055.48%530.550.52%motif file (matrix) pdf
46Stat3(Stat)/mES-Stat3-ChIP-Seq(GSE11431)/Homer1e-3-7.326e+000.0038289.027.55%244.923.32%motif file (matrix) pdf
47NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer1e-3-7.308e+000.0038697.066.44%647.461.65%motif file (matrix) pdf
48AR-halfsite(NR)/LNCaP-AR-ChIP-Seq(GSE27824)/Homer1e-3-7.159e+000.0043968.092.28%938.289.34%motif file (matrix) pdf
49THRa(NR)/C17.2-THRa-ChIP-Seq(GSE38347)/Homer1e-3-7.103e+000.0044238.022.69%197.318.79%motif file (matrix) pdf
50ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer1e-3-7.054e+000.004637.03.53%21.82.07%motif file (matrix) pdf
51Eomes(T-box)/H9-Eomes-ChIP-Seq(GSE26097)/Homer1e-3-6.921e+000.0051664.063.30%615.658.62%motif file (matrix) pdf
52NFkB-p65(RHD)/GM12787-p65-ChIP-Seq(GSE19485)/Homer1e-2-6.805e+000.0056255.024.31%214.420.42%motif file (matrix) pdf
53EBF(EBF)/proBcell-EBF-ChIP-Seq(GSE21978)/Homer1e-2-6.795e+000.0056144.013.73%112.410.71%motif file (matrix) pdf
54Tbx5(T-box)/HL1-Tbx5.biotin-ChIP-Seq(GSE21529)/Homer1e-2-6.428e+000.0079923.087.99%890.384.78%motif file (matrix) pdf
55AP-2gamma(AP2)/MCF7-TFAP2C-ChIP-Seq(GSE21234)/Homer1e-2-6.410e+000.0079636.060.63%589.456.13%motif file (matrix) pdf
56Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer1e-2-6.268e+000.0089822.078.36%782.574.52%motif file (matrix) pdf
57Ap4(bHLH)/AML-Tfap4-ChIP-Seq(GSE45738)/Homer1e-2-5.927e+000.0123512.048.81%467.944.55%motif file (matrix) pdf
58Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer1e-2-5.925e+000.0123330.031.46%289.527.57%motif file (matrix) pdf
59Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer1e-2-5.767e+000.0140224.021.35%189.218.02%motif file (matrix) pdf
60Jun-AP1(bZIP)/K562-cJun-ChIP-Seq(GSE31477)/Homer1e-2-5.750e+000.0140107.010.20%82.67.87%motif file (matrix) pdf
61Pax7(Paired,Homeobox),longest/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer1e-2-5.620e+000.01575.00.48%1.50.15%motif file (matrix) pdf
62Atoh1(bHLH)/Cerebellum-Atoh1-ChIP-Seq(GSE22111)/Homer1e-2-5.593e+000.0159484.046.14%441.142.01%motif file (matrix) pdf
63Bcl6(Zf)/Liver-Bcl6-ChIP-Seq(GSE31578)/Homer1e-2-5.531e+000.0166556.053.00%514.048.94%motif file (matrix) pdf
64Srebp1a(bHLH)/HepG2-Srebp1a-ChIP-Seq(GSE31477)/Homer1e-2-5.512e+000.0166104.09.91%80.87.70%motif file (matrix) pdf
65PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer1e-2-5.444e+000.0176247.023.55%212.820.27%motif file (matrix) pdf
66Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer1e-2-5.301e+000.019976.07.24%56.05.33%motif file (matrix) pdf
67Bach2(bZIP)/OCILy7-Bach2-ChIP-Seq(GSE44420)/Homer1e-2-4.993e+000.026782.07.82%62.55.95%motif file (matrix) pdf
68SCL(bHLH)/HPC7-Scl-ChIP-Seq(GSE13511)/Homer1e-2-4.884e+000.02941013.096.57%997.795.01%motif file (matrix) pdf
69Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer1e-2-4.682e+000.0354828.078.93%796.175.81%motif file (matrix) pdf
70IRF1(IRF)/PBMC-IRF1-ChIP-Seq(GSE43036)/Homer1e-2-4.655e+000.035990.08.58%70.96.75%motif file (matrix) pdf